Kernel: SageMath (stable)
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There are 61 bases, listed below:
['UGU', 'UGC', 'GAU', 'GAC', 'UCU', 'UCC', 'UCA', 'UCG', 'AGU', 'AGC', 'CAA', 'CAG', 'AAA', 'AAG', 'UGG', 'CCU', 'CCC', 'CCA', 'CCG', 'ACU', 'ACC', 'ACA', 'ACG', 'UUU', 'UUC', 'GCU', 'GCC', 'GCA', 'GCG', 'AUU', 'AUC', 'AUA', 'GGU', 'GGC', 'GGA', 'GGG', 'CAU', 'CAC', 'UAA', 'UUG', 'CUU', 'CUC', 'CUA', 'CUG', 'CGU', 'CGC', 'CGA', 'CGG', 'AGA', 'AGG', 'AUG', 'GAA', 'GAG', 'AAU', 'AAC', 'UAU', 'UAC', 'GUU', 'GUC', 'GUA', 'GUG']
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The probability of a start codon is 1.6393442623%
This agrees with an expected percent of 1.6393442623%
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[('Cys', 'UGU'), ('Cys', 'UGC'), ('Asp', 'GAU'), ('Asp', 'GAC'), ('Ser', 'UCU'), ('Ser', 'UCC'), ('Ser', 'UCA'), ('Ser', 'UCG'), ('Ser', 'AGU'), ('Ser', 'AGC'), ('Gln', 'CAA'), ('Gln', 'CAG'), ('Lys', 'AAA'), ('Lys', 'AAG'), ('Trp', 'UGG'), ('Pro', 'CCU'), ('Pro', 'CCC'), ('Pro', 'CCA'), ('Pro', 'CCG'), ('Thr', 'ACU'), ('Thr', 'ACC'), ('Thr', 'ACA'), ('Thr', 'ACG'), ('Phe', 'UUU'), ('Phe', 'UUC'), ('Ala', 'GCU'), ('Ala', 'GCC'), ('Ala', 'GCA'), ('Ala', 'GCG'), ('IIE', 'AUU'), ('IIE', 'AUC'), ('IIE', 'AUA'), ('Gly', 'GGU'), ('Gly', 'GGC'), ('Gly', 'GGA'), ('Gly', 'GGG'), ('His', 'CAU'), ('His', 'CAC'), ('Leu', 'UAA'), ('Leu', 'UUG'), ('Leu', 'CUU'), ('Leu', 'CUC'), ('Leu', 'CUA'), ('Leu', 'CUG'), ('Arg', 'CGU'), ('Arg', 'CGC'), ('Arg', 'CGA'), ('Arg', 'CGG'), ('Arg', 'AGA'), ('Arg', 'AGG'), ('Met', 'AUG'), ('Glu', 'GAA'), ('Glu', 'GAG'), ('Asn', 'AAU'), ('Asn', 'AAC'), ('Tyr', 'UAU'), ('Tyr', 'UAC'), ('Val', 'GUU'), ('Val', 'GUC'), ('Val', 'GUA'), ('Val', 'GUG')]
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['Lys', 'Lys', 'Asn', 'Asn']
[2, 2]
['Ser', 'Ser', 'Arg', 'Arg']
[2, 2]
['Thr', 'Thr', 'Thr', 'Thr']
[4]
['IIE', 'IIE', 'IIE', 'Met']
[3, 1]
['Asp', 'Asp', 'Glu', 'Glu']
[2, 2]
['Gly', 'Gly', 'Gly', 'Gly']
[4]
['Ala', 'Ala', 'Ala', 'Ala']
[4]
['Val', 'Val', 'Val', 'Val']
[4]
['Gln', 'Gln', 'His', 'His']
[2, 2]
['Arg', 'Arg', 'Arg', 'Arg']
[4]
['Pro', 'Pro', 'Pro', 'Pro']
[4]
['Leu', 'Leu', 'Leu', 'Leu']
[4]
['Leu', 'Tyr', 'Tyr']
[1, 2]
['Cys', 'Cys', 'Trp']
[2, 1]
['Ser', 'Ser', 'Ser', 'Ser']
[4]
['Phe', 'Phe', 'Leu']
[1, 2]
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The probability of a Codons having a different first two bases encodes for the same amino acid is 19.6721311475%
The probability of a Codons having the same first two bases encodes for the same amino acid is 80.3278688525%
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[12, 22, 24, 20, 12, 24, 12, 24, 11, 22]
[['Lys', 'Lys', 'Asn', 'Asn', 'Lys', 'Thr', 'IIE', 'Arg', 'Gln', 'Lys', 'Leu', 'Glu'], ['Asp', 'Asp', 'Glu', 'Glu', 'Ala', 'Gly', 'Glu', 'Val', 'Gly', 'Arg', 'Arg', 'Ser', 'Ser', 'Arg', 'Arg', 'Lys', 'Thr', 'Arg', 'Met', 'Gln', 'Lys', 'Glu'], ['Gln', 'Gln', 'His', 'His', 'Gln', 'Pro', 'Leu', 'Arg', 'Ser', 'Pro', 'Thr', 'Ala', 'Thr', 'Thr', 'Thr', 'Thr', 'Ser', 'Thr', 'IIE', 'Asn', 'Asp', 'His', 'Asn', 'Tyr'], ['Leu', 'Tyr', 'Tyr', 'Ser', 'Leu', 'IIE', 'Leu', 'Val', 'IIE', 'IIE', 'IIE', 'Met', 'Ser', 'Thr', 'IIE', 'Asn', 'Asp', 'His', 'Asn', 'Tyr'], ['Gly', 'Gly', 'Gly', 'Gly', 'Ala', 'Gly', 'Glu', 'Val', 'Trp', 'Gly', 'Arg', 'Arg'], ['Arg', 'Arg', 'Arg', 'Arg', 'Gln', 'Pro', 'Leu', 'Arg', 'Ser', 'Pro', 'Thr', 'Ala', 'Ala', 'Ala', 'Ala', 'Ala', 'Asp', 'Ala', 'Gly', 'Val', 'Cys', 'Ser', 'Gly', 'Arg'], ['Pro', 'Pro', 'Pro', 'Pro', 'Pro', 'His', 'Leu', 'Arg', 'Ser', 'Pro', 'Thr', 'Ala'], ['Ser', 'Ser', 'Ser', 'Ser', 'Cys', 'Ser', 'Phe', 'Tyr', 'Phe', 'IIE', 'Leu', 'Val', 'Leu', 'Leu', 'Leu', 'Leu', 'Pro', 'His', 'Leu', 'Arg', 'Ser', 'Pro', 'Thr', 'Ala'], ['Phe', 'Phe', 'Leu', 'Cys', 'Ser', 'Phe', 'Tyr', 'Phe', 'IIE', 'Leu', 'Val'], ['Val', 'Val', 'Val', 'Val', 'Asp', 'Ala', 'Gly', 'Val', 'Cys', 'Ser', 'Gly', 'Arg', 'Cys', 'Cys', 'Trp', 'Ser', 'Trp', 'Leu', 'Leu', 'Leu', 'Met', 'Val']]
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['Lys', 'Lys', 'Asn', 'Asn', 'Lys', 'Thr', 'IIE', 'Arg', 'Gln', 'Lys', 'Leu', 'Glu']
[1, 4, 1, 1, 1, 1, 1, 2]
['Asp', 'Asp', 'Glu', 'Glu', 'Ala', 'Gly', 'Glu', 'Val', 'Gly', 'Arg', 'Arg', 'Ser', 'Ser', 'Arg', 'Arg', 'Lys', 'Thr', 'Arg', 'Met', 'Gln', 'Lys', 'Glu']
[2, 2, 1, 2, 1, 1, 1, 2, 5, 1, 4]
['Gln', 'Gln', 'His', 'His', 'Gln', 'Pro', 'Leu', 'Arg', 'Ser', 'Pro', 'Thr', 'Ala', 'Thr', 'Thr', 'Thr', 'Thr', 'Ser', 'Thr', 'IIE', 'Asn', 'Asp', 'His', 'Asn', 'Tyr']
[3, 2, 3, 2, 6, 1, 1, 1, 1, 1, 2, 1]
['Leu', 'Tyr', 'Tyr', 'Ser', 'Leu', 'IIE', 'Leu', 'Val', 'IIE', 'IIE', 'IIE', 'Met', 'Ser', 'Thr', 'IIE', 'Asn', 'Asp', 'His', 'Asn', 'Tyr']
[1, 2, 1, 1, 5, 1, 1, 3, 2, 3]
['Gly', 'Gly', 'Gly', 'Gly', 'Ala', 'Gly', 'Glu', 'Val', 'Trp', 'Gly', 'Arg', 'Arg']
[1, 1, 6, 2, 1, 1]
['Arg', 'Arg', 'Arg', 'Arg', 'Gln', 'Pro', 'Leu', 'Arg', 'Ser', 'Pro', 'Thr', 'Ala', 'Ala', 'Ala', 'Ala', 'Ala', 'Asp', 'Ala', 'Gly', 'Val', 'Cys', 'Ser', 'Gly', 'Arg']
[1, 1, 2, 1, 2, 1, 6, 2, 1, 6, 1]
['Pro', 'Pro', 'Pro', 'Pro', 'Pro', 'His', 'Leu', 'Arg', 'Ser', 'Pro', 'Thr', 'Ala']
[1, 1, 6, 1, 1, 1, 1]
['Ser', 'Ser', 'Ser', 'Ser', 'Cys', 'Ser', 'Phe', 'Tyr', 'Phe', 'IIE', 'Leu', 'Val', 'Leu', 'Leu', 'Leu', 'Leu', 'Pro', 'His', 'Leu', 'Arg', 'Ser', 'Pro', 'Thr', 'Ala']
[1, 1, 6, 1, 2, 1, 2, 1, 1, 6, 1, 1]
['Phe', 'Phe', 'Leu', 'Cys', 'Ser', 'Phe', 'Tyr', 'Phe', 'IIE', 'Leu', 'Val']
[1, 1, 1, 4, 1, 2, 1]
['Val', 'Val', 'Val', 'Val', 'Asp', 'Ala', 'Gly', 'Val', 'Cys', 'Ser', 'Gly', 'Arg', 'Cys', 'Cys', 'Trp', 'Ser', 'Trp', 'Leu', 'Leu', 'Leu', 'Met', 'Val']
[3, 1, 2, 6, 1, 1, 2, 3, 1, 2]
In [45]:
0.333333333333
0.227272727273
0.25
0.25
0.5
0.25
0.5
0.25
0.363636363636
0.272727272727
The probability of a Codon having the same two bases implies the same amino acid is 29.5081967213%
The probability of a Codon having different two bases implies the same amino acid is 70.4918032787%