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\documentclass{article}\usepackage[]{graphicx}\usepackage[]{color}
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%% maxwidth is the original width if it is less than linewidth
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%% otherwise use linewidth (to make sure the graphics do not exceed the margin)
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\makeatletter
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\def\maxwidth{ %
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\ifdim\Gin@nat@width>\linewidth
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\linewidth
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\else
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\Gin@nat@width
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\fi
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}
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\makeatother
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\definecolor{fgcolor}{rgb}{0.345, 0.345, 0.345}
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\newcommand{\hlnum}[1]{\textcolor[rgb]{0.686,0.059,0.569}{#1}}%
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\newcommand{\hlstr}[1]{\textcolor[rgb]{0.192,0.494,0.8}{#1}}%
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\newcommand{\hlcom}[1]{\textcolor[rgb]{0.678,0.584,0.686}{\textit{#1}}}%
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\newcommand{\hlopt}[1]{\textcolor[rgb]{0,0,0}{#1}}%
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\newcommand{\hlstd}[1]{\textcolor[rgb]{0.345,0.345,0.345}{#1}}%
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\newcommand{\hlkwa}[1]{\textcolor[rgb]{0.161,0.373,0.58}{\textbf{#1}}}%
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\newcommand{\hlkwb}[1]{\textcolor[rgb]{0.69,0.353,0.396}{#1}}%
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\newcommand{\hlkwc}[1]{\textcolor[rgb]{0.333,0.667,0.333}{#1}}%
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\newcommand{\hlkwd}[1]{\textcolor[rgb]{0.737,0.353,0.396}{\textbf{#1}}}%
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\let\hlipl\hlkwb
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\usepackage{framed}
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\makeatletter
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\newenvironment{kframe}{%
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\def\at@end@of@kframe{}%
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\ifinner\ifhmode%
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\def\at@end@of@kframe{\end{minipage}}%
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\begin{minipage}{\columnwidth}%
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\fi\fi%
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\def\FrameCommand##1{\hskip\@totalleftmargin \hskip-\fboxsep
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\colorbox{shadecolor}{##1}\hskip-\fboxsep
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% There is no \\@totalrightmargin, so:
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\hskip-\linewidth \hskip-\@totalleftmargin \hskip\columnwidth}%
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\MakeFramed {\advance\hsize-\width
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\@totalleftmargin\z@ \linewidth\hsize
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\@setminipage}}%
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{\par\unskip\endMakeFramed%
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\at@end@of@kframe}
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\makeatother
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\definecolor{shadecolor}{rgb}{.97, .97, .97}
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\definecolor{messagecolor}{rgb}{0, 0, 0}
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\definecolor{warningcolor}{rgb}{1, 0, 1}
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\definecolor{errorcolor}{rgb}{1, 0, 0}
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\newenvironment{knitrout}{}{} % an empty environment to be redefined in TeX
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\usepackage{alltt}
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\usepackage[utf8]{inputenc}
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\title{knitr-test}
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\author{Harald Schilly}
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\date{July 2018}
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\IfFileExists{upquote.sty}{\usepackage{upquote}}{}
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\begin{document}
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You can type R commands in your \LaTeX{} document and they will be properly run and the output printed in the document.
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\begin{knitrout}
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\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
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\begin{alltt}
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\hlkwd{library}\hlstd{(knitr)}
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\hlstd{opts_chunk}\hlopt{$}\hlkwd{set}\hlstd{(}\hlkwc{fig.path}\hlstd{=}\hlstr{'figure/latex-'}\hlstd{,} \hlkwc{cache.path}\hlstd{=}\hlstr{'cache/latex-'}\hlstd{)}
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\end{alltt}
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\end{kframe}
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\end{knitrout}
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\begin{knitrout}
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\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
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\begin{alltt}
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\hlcom{# Create a sequence of numbers}
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\hlstd{X} \hlkwb{=} \hlnum{2}\hlopt{:}\hlnum{10}
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\hlcom{# Display basic statistical measures}
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\hlkwd{summary}\hlstd{(X)}
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\end{alltt}
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\begin{verbatim}
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## Min. 1st Qu. Median Mean 3rd Qu. Max.
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## 2 4 6 6 8 10
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\end{verbatim}
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\end{kframe}
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\end{knitrout}
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t
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t
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t
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t
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t
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t
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\begin{knitrout}
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\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
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\begin{alltt}
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\hlstd{fileConn}\hlkwb{<-}\hlkwd{file}\hlstd{(}\hlstr{"data.txt"}\hlstd{)}
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\hlkwd{writeLines}\hlstd{(}\hlkwd{paste}\hlstd{(}\hlkwd{c}\hlstd{(}\hlnum{1}\hlopt{:}\hlnum{10}\hlstd{),} \hlkwc{collapse}\hlstd{=}\hlstr{", "}\hlstd{), fileConn)}
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\hlkwd{close}\hlstd{(fileConn)}
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\end{alltt}
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\end{kframe}
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\end{knitrout}
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and output
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\begin{knitrout}
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\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
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\begin{alltt}
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\hlstd{fileConn} \hlkwb{<-} \hlkwd{file}\hlstd{(}\hlstr{"data.txt"}\hlstd{)}
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\hlstd{data} \hlkwb{<-} \hlkwd{readLines}\hlstd{(fileConn)}
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\hlkwd{message}\hlstd{(data)}
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\end{alltt}
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{\ttfamily\noindent\itshape\color{messagecolor}{\#\# 1, 2, 3, 4, 5, 6, 7, 8, 9, 10}}\end{kframe}
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\end{knitrout}
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data: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10.
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t
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\begin{knitrout}
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\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
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\begin{alltt}
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\hlkwd{system}\hlstd{(}\hlstr{"mount"}\hlstd{,} \hlkwc{intern} \hlstd{=} \hlnum{TRUE}\hlstd{)}
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\end{alltt}
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\begin{verbatim}
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## [1] "none on / type aufs (rw,relatime,si=34223f5145629321,dio,dirperm1)"
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## [2] "proc on /proc type proc (rw,nosuid,nodev,noexec,relatime)"
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## [3] "tmpfs on /dev type tmpfs (rw,nosuid,mode=755)"
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## [4] "devpts on /dev/pts type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=666)"
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## [5] "sysfs on /sys type sysfs (ro,nosuid,nodev,noexec,relatime)"
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## [6] "tmpfs on /sys/fs/cgroup type tmpfs (ro,nosuid,nodev,noexec,relatime,mode=755)"
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## [7] "cgroup on /sys/fs/cgroup/systemd type cgroup (ro,nosuid,nodev,noexec,relatime,xattr,release_agent=/lib/systemd/systemd-cgroups-agent,name=systemd)"
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## [8] "cgroup on /sys/fs/cgroup/blkio type cgroup (ro,nosuid,nodev,noexec,relatime,blkio)"
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## [9] "cgroup on /sys/fs/cgroup/rdma type cgroup (ro,nosuid,nodev,noexec,relatime,rdma)"
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## [10] "cgroup on /sys/fs/cgroup/hugetlb type cgroup (ro,nosuid,nodev,noexec,relatime,hugetlb)"
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## [11] "cgroup on /sys/fs/cgroup/memory type cgroup (ro,nosuid,nodev,noexec,relatime,memory)"
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## [12] "cgroup on /sys/fs/cgroup/cpuset type cgroup (ro,nosuid,nodev,noexec,relatime,cpuset)"
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## [13] "cgroup on /sys/fs/cgroup/net_cls,net_prio type cgroup (ro,nosuid,nodev,noexec,relatime,net_cls,net_prio)"
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## [14] "cgroup on /sys/fs/cgroup/perf_event type cgroup (ro,nosuid,nodev,noexec,relatime,perf_event)"
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## [15] "cgroup on /sys/fs/cgroup/freezer type cgroup (ro,nosuid,nodev,noexec,relatime,freezer)"
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## [16] "cgroup on /sys/fs/cgroup/cpu,cpuacct type cgroup (ro,nosuid,nodev,noexec,relatime,cpu,cpuacct)"
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## [17] "cgroup on /sys/fs/cgroup/pids type cgroup (ro,nosuid,nodev,noexec,relatime,pids)"
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## [18] "cgroup on /sys/fs/cgroup/devices type cgroup (ro,nosuid,nodev,noexec,relatime,devices)"
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## [19] "mqueue on /dev/mqueue type mqueue (rw,nosuid,nodev,noexec,relatime)"
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## [20] "10.99.185.156:/2018-06-11_1604_p4/linux/Ubuntu-16.04/lib32 on /lib32 type nfs4 (ro,relatime,vers=4.0,rsize=1048576,wsize=1048576,namlen=255,soft,proto=tcp,timeo=30,retrans=3,sec=sys,clientaddr=10.240.0.13,fsc,local_lock=none,addr=10.99.185.156)"
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## [21] "10.99.185.156:/2018-06-11_1604_p4/linux/Ubuntu-16.04/lib64 on /lib64 type nfs4 (ro,relatime,vers=4.0,rsize=1048576,wsize=1048576,namlen=255,soft,proto=tcp,timeo=30,retrans=3,sec=sys,clientaddr=10.240.0.13,fsc,local_lock=none,addr=10.99.185.156)"
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## [22] "tmpfs on /tmp type tmpfs (rw,relatime)"
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## [23] "10.99.185.156:/2018-06-11_1604_p4/linux/Ubuntu-16.04/sbin on /sbin type nfs4 (ro,relatime,vers=4.0,rsize=1048576,wsize=1048576,namlen=255,soft,proto=tcp,timeo=30,retrans=3,sec=sys,clientaddr=10.240.0.13,fsc,local_lock=none,addr=10.99.185.156)"
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## [24] "10.99.185.156:/2018-06-11_1604_p4/linux/Ubuntu-16.04/usr on /usr type nfs4 (ro,relatime,vers=4.0,rsize=1048576,wsize=1048576,namlen=255,soft,proto=tcp,timeo=30,retrans=3,sec=sys,clientaddr=10.240.0.13,fsc,local_lock=none,addr=10.99.185.156)"
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## [25] "10.99.185.156:/2018-06-11_1604_p4 on /ext type nfs4 (ro,relatime,vers=4.0,rsize=1048576,wsize=1048576,namlen=255,soft,proto=tcp,timeo=30,retrans=3,sec=sys,clientaddr=10.240.0.13,fsc,local_lock=none,addr=10.99.185.156)"
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## [26] "10.99.185.156:/2018-06-11_1604_p4/linux/Ubuntu-16.04/opt on /opt type nfs4 (ro,relatime,vers=4.0,rsize=1048576,wsize=1048576,namlen=255,soft,proto=tcp,timeo=30,retrans=3,sec=sys,clientaddr=10.240.0.13,fsc,local_lock=none,addr=10.99.185.156)"
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## [27] "10.99.185.156:/2018-06-11_1604_p4/linux/Ubuntu-16.04/bin on /bin type nfs4 (ro,relatime,vers=4.0,rsize=1048576,wsize=1048576,namlen=255,soft,proto=tcp,timeo=30,retrans=3,sec=sys,clientaddr=10.240.0.13,fsc,local_lock=none,addr=10.99.185.156)"
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## [28] "10.99.185.156:/2018-06-11_1604_p4/linux/Ubuntu-16.04/libx32 on /libx32 type nfs4 (ro,relatime,vers=4.0,rsize=1048576,wsize=1048576,namlen=255,soft,proto=tcp,timeo=30,retrans=3,sec=sys,clientaddr=10.240.0.13,fsc,local_lock=none,addr=10.99.185.156)"
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## [29] "10.99.185.156:/2018-06-11_1604_p4/linux/Ubuntu-16.04/var on /var type nfs4 (ro,relatime,vers=4.0,rsize=1048576,wsize=1048576,namlen=255,soft,proto=tcp,timeo=30,retrans=3,sec=sys,clientaddr=10.240.0.13,fsc,local_lock=none,addr=10.99.185.156)"
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## [30] "10.99.185.156:/2018-06-11_1604_p4/linux/Ubuntu-16.04/etc on /etc type nfs4 (ro,relatime,vers=4.0,rsize=1048576,wsize=1048576,namlen=255,soft,proto=tcp,timeo=30,retrans=3,sec=sys,clientaddr=10.240.0.13,fsc,local_lock=none,addr=10.99.185.156)"
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## [31] "10.99.185.156:/2018-06-11_1604_p4/linux/Ubuntu-16.04/lib on /lib type nfs4 (ro,relatime,vers=4.0,rsize=1048576,wsize=1048576,namlen=255,soft,proto=tcp,timeo=30,retrans=3,sec=sys,clientaddr=10.240.0.13,fsc,local_lock=none,addr=10.99.185.156)"
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## [32] "tmpfs on /secrets/secret-token type tmpfs (ro,relatime)"
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## [33] "kucalc-default-project-20e4a191-73ea-4921-80e9-0a5d792fc511 on /home/user type zfs (rw,xattr,noacl)"
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## [34] "bindfs on /home/user/.snapshots type fuse.bindfs (rw,nosuid,nodev,relatime,user_id=0,group_id=0,default_permissions,allow_other)"
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## [35] "tmpfs on /secrets/gateway-public type tmpfs (ro,relatime)"
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## [36] "/dev/sda1 on /dev/termination-log type ext4 (rw,relatime,data=ordered)"
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## [37] "/dev/sda1 on /etc/resolv.conf type ext4 (rw,relatime,data=ordered)"
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## [38] "/dev/sda1 on /etc/hostname type ext4 (rw,relatime,data=ordered)"
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## [39] "/dev/sda1 on /etc/hosts type ext4 (rw,relatime,data=ordered)"
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## [40] "shm on /dev/shm type tmpfs (rw,nosuid,nodev,noexec,relatime,size=65536k)"
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## [41] "tmpfs on /run/secrets/kubernetes.io/serviceaccount type tmpfs (ro,relatime)"
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## [42] "proc on /proc/bus type proc (ro,nosuid,nodev,noexec,relatime)"
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## [43] "proc on /proc/fs type proc (ro,nosuid,nodev,noexec,relatime)"
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## [44] "proc on /proc/irq type proc (ro,nosuid,nodev,noexec,relatime)"
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## [45] "proc on /proc/sys type proc (ro,nosuid,nodev,noexec,relatime)"
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## [46] "proc on /proc/sysrq-trigger type proc (ro,nosuid,nodev,noexec,relatime)"
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## [47] "tmpfs on /proc/kcore type tmpfs (rw,nosuid,mode=755)"
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## [48] "tmpfs on /proc/timer_list type tmpfs (rw,nosuid,mode=755)"
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## [49] "tmpfs on /proc/sched_debug type tmpfs (rw,nosuid,mode=755)"
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\end{verbatim}
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\end{kframe}
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\end{knitrout}
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\begin{knitrout}
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\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
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\begin{alltt}
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\hlkwd{system}\hlstd{(}\hlstr{"hostname"}\hlstd{,} \hlkwc{intern} \hlstd{=} \hlnum{TRUE}\hlstd{)}
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\end{alltt}
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\begin{verbatim}
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## [1] "project-20e4a191-73ea-4921-80e9-0a5d792fc511"
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\end{verbatim}
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\end{kframe}
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\end{knitrout}
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\begin{knitrout}
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\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
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\begin{alltt}
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\hlkwd{system}\hlstd{(}\hlstr{"cat /etc/os-release"}\hlstd{,} \hlkwc{intern} \hlstd{=} \hlnum{TRUE}\hlstd{)}
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\end{alltt}
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\begin{verbatim}
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## [1] "NAME=\"Ubuntu\""
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## [2] "VERSION=\"16.04.4 LTS (Xenial Xerus)\""
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## [3] "ID=ubuntu"
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## [4] "ID_LIKE=debian"
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## [5] "PRETTY_NAME=\"Ubuntu 16.04.4 LTS\""
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## [6] "VERSION_ID=\"16.04\""
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## [7] "HOME_URL=\"http://www.ubuntu.com/\""
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## [8] "SUPPORT_URL=\"http://help.ubuntu.com/\""
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## [9] "BUG_REPORT_URL=\"http://bugs.launchpad.net/ubuntu/\""
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## [10] "VERSION_CODENAME=xenial"
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## [11] "UBUNTU_CODENAME=xenial"
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\end{verbatim}
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\end{kframe}
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\end{knitrout}
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\begin{knitrout}
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\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
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\begin{alltt}
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\hlkwd{system}\hlstd{(}\hlstr{"ls -la"}\hlstd{,} \hlkwc{intern} \hlstd{=} \hlnum{TRUE}\hlstd{)}
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\end{alltt}
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\begin{verbatim}
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## [1] "total 1808"
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## [2] "drwxrwx--- 9 user user 150 Jul 8 09:06 ."
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## [3] "drwx------ 135 user user 1120 Jul 9 12:19 .."
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## [4] "-rw-r----- 1 user user 1611 Jan 3 2016 ..test.ipynb.syncdoc4.sage-history"
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## [5] "-rw-r--r-- 1 user user 0 Jun 18 14:09 .2018-01-28-210904.tex.lock"
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## [6] "-rw-rw---- 1 user user 0 Apr 11 2015 .data.sagetex.sout.sage-chat"
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## [7] "-rw-rw---- 1 user user 3843 Apr 11 2015 .data.sagetex.sout.sage-history"
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## [8] "-rw-rw---- 1 user user 0 Apr 11 2015 .data.sagews.sage-chat"
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## [9] "-rw-rw---- 1 user user 104801 Apr 11 2015 .data.sagews.sage-history"
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## [10] "-rw-r--r-- 1 user user 0 Feb 1 19:15 .data.tex.lock"
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## [11] "-rw-rw---- 1 user user 579 Apr 13 2015 .data.tex.sage-chat"
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## [12] "-rw-rw---- 1 user user 64183 Jun 11 2015 .data.tex.sage-history"
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## [13] "-rw-r--r-- 1 user user 145 Jun 22 07:58 .default.tex.syncdb"
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## [14] "-rw------- 1 user user 0 Sep 19 2017 .empty.tex.lock"
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## [15] "-rw------- 1 user user 0 May 24 10:35 .example.tex.lock"
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## [16] "-rw-rw---- 1 user user 850 Mar 29 12:56 .example.tex.sage-chat"
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## [17] "-rw-rw---- 1 user user 8029 Apr 13 2015 .example.tex.sage-history"
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## [18] "-rw-r--r-- 1 user user 149 Jun 18 13:56 .example.tex.syncdb"
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## [19] "-rw-r--r-- 1 user user 148 Jun 22 07:57 .german.tex.syncdb"
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## [20] "-rw-rw---- 1 user user 0 Dec 18 2013 .hangul.tex.sage-chat"
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## [21] "drwxr-x--- 2 user user 3 Jan 3 2016 .ipynb_checkpoints"
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## [22] "-rw-r----- 1 user user 0 Mar 11 2016 .latexmk.fls.sage-chat"
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## [23] "-rw-r----- 1 user user 4128 Mar 11 2016 .latexmk.fls.sage-history"
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## [24] "-rw-r--r-- 1 user user 0 Mar 14 14:36 .latexmk.tex.lock"
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## [25] "-rw-r----- 1 user user 0 Dec 2 2015 .latexmk.tex.sage-chat"
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## [26] "-rw-r----- 1 user user 3325 Dec 30 2015 .latexmk.tex.sage-history"
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## [27] "-rw------- 1 user user 0 Feb 1 19:33 .long-presentation.tex.lock"
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## [28] "-rw-r--r-- 1 user user 0 Mar 28 16:55 .small.tex.lock"
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## [29] "-rw-r--r-- 1 user user 0 Aug 16 2015 .subdir.tex.sage-chat"
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## [30] "-rw-r--r-- 1 user user 1149 Aug 16 2015 .subdir.tex.sage-history"
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## [31] "-rw-r--r-- 1 user user 144 Jul 4 14:14 .system.rnw.syncdb"
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## [32] "-rw-r----- 1 user user 636 Jan 3 2016 .test.ipynb.syncdoc4"
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## [33] "-rw-r--r-- 1 user user 142 Jun 30 07:50 .test.rnw.syncdb"
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## [34] "-rw-r--r-- 1 user user 0 Jun 29 14:29 .test.tex.lock"
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## [35] "-rw-r--r-- 1 user user 109 Jun 18 14:09 2018-01-28-210904-concordance.tex"
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## [36] "-rw-r--r-- 1 user user 8 Jun 18 14:09 2018-01-28-210904.aux"
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## [37] "-rw-r--r-- 1 user user 7687 Jun 18 14:09 2018-01-28-210904.fdb_latexmk"
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## [38] "-rw-r--r-- 1 user user 7029 Jun 18 14:09 2018-01-28-210904.fls"
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## [39] "-rw-r--r-- 1 user user 32206 Jun 18 14:09 2018-01-28-210904.log"
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## [40] "-rw-r--r-- 1 user user 67985 Jun 18 14:09 2018-01-28-210904.pdf"
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## [41] "-rw-r--r-- 1 user user 571 Jan 28 20:09 2018-01-28-210904.rnw"
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## [42] "-rw-r--r-- 1 user user 2154 Jun 18 14:09 2018-01-28-210904.synctex.gz"
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## [43] "-rw-r--r-- 1 user user 2878 Jun 18 14:09 2018-01-28-210904.tex"
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## [44] "-rw-rw---- 1 user user 200 Apr 11 2015 E2.sobj"
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## [45] "drwxr-xr-x 2 user user 8 Jun 19 2017 build"
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## [46] "drwxr-xr-x 2 user user 30 Jul 4 14:16 cache"
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## [47] "-rw-r----- 1 user user 181 Feb 1 19:15 data.aux"
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## [48] "-rw-r----- 1 user user 6549 Feb 1 19:15 data.fdb_latexmk"
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## [49] "-rw-r--r-- 1 user user 6439 Feb 1 19:15 data.fls"
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## [50] "-rw-r----- 1 user user 12449 Feb 1 19:15 data.log"
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## [51] "-rw-r----- 1 user user 58943 Feb 1 19:15 data.pdf"
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## [52] "-rw-r----- 1 user user 1374 Feb 1 19:15 data.sagetex.sage"
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## [53] "-rw-r--r-- 1 user user 2187 Feb 1 19:15 data.sagetex.sage.py"
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## [54] "-rw-r--r-- 1 user user 238 Feb 1 19:15 data.sagetex.scmd"
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## [55] "-rw-r--r-- 1 user user 1495 Feb 1 19:15 data.sagetex.sout"
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## [56] "-rw-rw---- 1 user user 5790 Apr 11 2015 data.sagews"
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## [57] "-rw-r--r-- 1 user user 8855 Feb 1 19:15 data.synctex.gz"
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## [58] "-rw-rw---- 1 user user 1402 Jan 1 2017 data.tex"
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## [59] "-rw-r--r-- 1 user user 30 Jul 4 14:16 data.txt"
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## [60] "-rw-r--r-- 1 user user 662 Jul 1 09:00 default.aux"
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## [61] "-rw-r--r-- 1 user user 6261 Jul 1 09:00 default.fdb_latexmk"
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## [62] "-rw-r--r-- 1 user user 5449 Jul 1 09:00 default.fls"
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## [63] "-rw-r--r-- 1 user user 27372 Jul 1 09:00 default.log"
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## [64] "-rw-r--r-- 1 user user 0 Jul 1 09:00 default.out"
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## [65] "-rw-r--r-- 1 user user 63141 Jul 1 09:00 default.pdf"
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## [66] "-rw-r--r-- 1 user user 1094 Jul 1 09:00 default.synctex.gz"
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## [67] "-rw-r--r-- 1 user user 661 Jun 22 07:58 default.tex"
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## [68] "-rw------- 1 user user 8 Sep 19 2017 empty.aux"
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## [69] "-rw------- 1 user user 4481 Sep 19 2017 empty.fdb_latexmk"
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\end{verbatim}
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\end{kframe}
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\end{knitrout}
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\begin{knitrout}
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\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
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\begin{alltt}
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\hlkwd{system}\hlstd{(}\hlstr{"ls -la .cache/clsi/*"}\hlstd{,} \hlkwc{intern} \hlstd{=} \hlnum{TRUE}\hlstd{)}
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\end{alltt}
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{\ttfamily\noindent\color{warningcolor}{\#\# Warning: running command 'ls -la .cache/clsi/*' had status 2}}\begin{verbatim}
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## character(0)
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## attr(,"status")
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## [1] 2
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\end{verbatim}
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\end{kframe}
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\end{knitrout}
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%/usr/lib/R/bin/exec/R --slave --no-restore -e %library('knitr');~+~setwd('/compile');~+~knit('main.Rtex')"
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\begin{knitrout}
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\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
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\begin{alltt}
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\hlkwd{system}\hlstd{(}\hlstr{"cat .project-sync-state"}\hlstd{,} \hlkwc{intern} \hlstd{=} \hlnum{TRUE}\hlstd{)}
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\end{alltt}
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{\ttfamily\noindent\color{warningcolor}{\#\# Warning: running command 'cat .project-sync-state' had status 1}}\begin{verbatim}
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## character(0)
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## attr(,"status")
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## [1] 1
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\end{verbatim}
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\end{kframe}
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\end{knitrout}
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\begin{knitrout}
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\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
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\begin{alltt}
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\hlkwd{system}\hlstd{(}\hlstr{"ps aux"}\hlstd{,} \hlkwc{intern} \hlstd{=} \hlnum{TRUE}\hlstd{)}
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\end{alltt}
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\begin{verbatim}
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## [1] "USER PID %CPU %MEM VSZ RSS TTY STAT START TIME COMMAND"
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## [2] "user 1 0.0 0.0 212 4 ? Ss 12:18 0:00 /cocalc/bin/dumb-init -- sh -c env -i /cocalc/init/init.sh $COCALC_PROJECT_ID"
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## [3] "user 6 0.0 0.0 435708 7176 ? Ssl 12:18 0:00 /cocalc/bin/supervisord -c /cocalc/supervisor/supervisord.conf"
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## [4] "user 24 0.0 0.0 67584 5656 ? S 12:18 0:00 /usr/sbin/sshd -D -p 2222 -h /tmp/.cocalc/ssh_host_rsa_key -o PidFile=/tmp/.cocalc/sshd.pid -f /cocalc/init/sshd_config"
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## [5] "user 25 0.2 0.1 916568 36872 ? Sl 12:18 0:00 node /cocalc/src/smc-project/console_server.js --port=6002 --kucalc"
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## [6] "user 28 9.1 0.6 1409232 176244 ? Sl 12:18 0:09 node /cocalc/src/smc-project/local_hub.js --tcp_port 6000 --raw_port 6001 --console_port=6002 --kucalc"
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## [7] "user 67 0.1 0.1 900932 31600 ? Sl 12:18 0:00 /usr/bin/node /cocalc/src/smc-project/console_server_child.js"
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## [8] "user 73 0.0 0.0 24516 7604 pts/0 Ss 12:18 0:00 bash"
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## [9] "user 116 0.0 0.0 18984 2280 pts/0 S+ 12:18 0:00 tmux"
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## [10] "user 118 0.0 0.0 28456 2768 ? Ss 12:18 0:00 tmux"
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## [11] "user 119 0.1 0.0 24524 7600 pts/1 Ss+ 12:18 0:00 -bash"
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## [12] "user 198 15.2 1.0 8606996 288952 ? Ssl 12:18 0:10 python -m sage.repl.ipython_kernel --matplotlib=inline -f /home/user/.local/share/jupyter/runtime/kernel-c5ae2e55-dbb7-4874-9c9c-480b8debe7e2.json"
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## [13] "user 342 0.8 0.6 8042216 185112 ? S 12:19 0:00 python -c import sys; sys.path.extend(['/cocalc/lib/python2.7/site-packages/']); from smc_sagews.sage_server_command_line import main; main('restart')"
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## [14] "user 343 18.8 1.0 8216760 284932 ? Sl 12:19 0:05 python -c import sys; sys.path.extend(['/cocalc/lib/python2.7/site-packages/']); from smc_sagews.sage_server_command_line import main; main('restart')"
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## [15] "user 367 55.4 0.2 329164 60752 ? S 12:19 0:02 /usr/lib/R/bin/exec/R --no-save --no-restore --quiet --no-readline -e require(knitr);~+~opts_knit$set(concordance~+~=~+~TRUE,~+~progress~+~=~+~FALSE);~+~knit(\"system.rnw\")"
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## [16] "user 399 0.0 0.0 38220 3132 ? R 12:19 0:00 ps aux"
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\end{verbatim}
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\end{kframe}
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\end{knitrout}
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\begin{knitrout}
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\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
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\begin{alltt}
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\hlstd{n} \hlkwb{<-} \hlstd{n} \hlopt{+} \hlnum{0}
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\hlkwd{Sys.sleep}\hlstd{(}\hlnum{0}\hlstd{)}
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\hlkwd{message}\hlstd{(}\hlkwd{cat}\hlstd{(n,} \hlstr{"secs later"}\hlstd{))}
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\end{alltt}
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\begin{verbatim}
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## 0 secs later
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\end{verbatim}
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{\ttfamily\noindent\itshape\color{messagecolor}{\#\# }}\end{kframe}
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\end{knitrout}
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\begin{knitrout}
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\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
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\begin{alltt}
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\hlkwd{message}\hlstd{(}\hlnum{1}\hlopt{:}\hlnum{10}\hlstd{)}
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\end{alltt}
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{\ttfamily\noindent\itshape\color{messagecolor}{\#\# 12345678910}}\end{kframe}
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\end{knitrout}
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ok
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\begin{knitrout}
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\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
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\begin{alltt}
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\hlkwd{message}\hlstd{(}\hlnum{1}\hlopt{:}\hlnum{10}\hlstd{)}
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\end{alltt}
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{\ttfamily\noindent\itshape\color{messagecolor}{\#\# 12345678910}}\end{kframe}
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\end{knitrout}
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ok
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\begin{knitrout}
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\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
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\begin{alltt}
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\hlkwd{message}\hlstd{(}\hlnum{1}\hlopt{:}\hlnum{10}\hlstd{)}
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\end{alltt}
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{\ttfamily\noindent\itshape\color{messagecolor}{\#\# 12345678910}}\end{kframe}
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\end{knitrout}
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\begin{knitrout}
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\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
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\begin{alltt}
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\hlkwd{message}\hlstd{(}\hlnum{1}\hlopt{:}\hlnum{10}\hlstd{)}
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\end{alltt}
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{\ttfamily\noindent\itshape\color{messagecolor}{\#\# 12345678910}}\end{kframe}
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\end{knitrout}
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\end{document}
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