\documentclass{article}\usepackage[]{graphicx}\usepackage[]{color}
\makeatletter
\def\maxwidth{
\ifdim\Gin@nat@width>\linewidth
\linewidth
\else
\Gin@nat@width
\fi
}
\makeatother
\definecolor{fgcolor}{rgb}{0.345, 0.345, 0.345}
\newcommand{\hlnum}[1]{\textcolor[rgb]{0.686,0.059,0.569}{#1}}
\newcommand{\hlstr}[1]{\textcolor[rgb]{0.192,0.494,0.8}{#1}}
\newcommand{\hlcom}[1]{\textcolor[rgb]{0.678,0.584,0.686}{\textit{#1}}}
\newcommand{\hlopt}[1]{\textcolor[rgb]{0,0,0}{#1}}
\newcommand{\hlstd}[1]{\textcolor[rgb]{0.345,0.345,0.345}{#1}}
\newcommand{\hlkwa}[1]{\textcolor[rgb]{0.161,0.373,0.58}{\textbf{#1}}}
\newcommand{\hlkwb}[1]{\textcolor[rgb]{0.69,0.353,0.396}{#1}}
\newcommand{\hlkwc}[1]{\textcolor[rgb]{0.333,0.667,0.333}{#1}}
\newcommand{\hlkwd}[1]{\textcolor[rgb]{0.737,0.353,0.396}{\textbf{#1}}}
\let\hlipl\hlkwb
\usepackage{framed}
\makeatletter
\newenvironment{kframe}{
\def\at@end@of@kframe{}
\ifinner\ifhmode
\def\at@end@of@kframe{\end{minipage}}
\begin{minipage}{\columnwidth}
\fi\fi
\def\FrameCommand##1{\hskip\@totalleftmargin \hskip-\fboxsep
\colorbox{shadecolor}{##1}\hskip-\fboxsep
\hskip-\linewidth \hskip-\@totalleftmargin \hskip\columnwidth}
\MakeFramed {\advance\hsize-\width
\@totalleftmargin\z@ \linewidth\hsize
\@setminipage}}
{\par\unskip\endMakeFramed
\at@end@of@kframe}
\makeatother
\definecolor{shadecolor}{rgb}{.97, .97, .97}
\definecolor{messagecolor}{rgb}{0, 0, 0}
\definecolor{warningcolor}{rgb}{1, 0, 1}
\definecolor{errorcolor}{rgb}{1, 0, 0}
\newenvironment{knitrout}{}{}
\usepackage{alltt}
\usepackage[utf8]{inputenc}
\title{knitr-test}
\author{Harald Schilly}
\date{July 2018}
\IfFileExists{upquote.sty}{\usepackage{upquote}}{}
\begin{document}
You can type R commands in your \LaTeX{} document and they will be properly run and the output printed in the document.
\begin{knitrout}
\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
\begin{alltt}
\hlkwd{library}\hlstd{(knitr)}
\hlstd{opts_chunk}\hlopt{$}\hlkwd{set}\hlstd{(}\hlkwc{fig.path}\hlstd{=}\hlstr{'figure/latex-'}\hlstd{,} \hlkwc{cache.path}\hlstd{=}\hlstr{'cache/latex-'}\hlstd{)}
\end{alltt}
\end{kframe}
\end{knitrout}
\begin{knitrout}
\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
\begin{alltt}
\hlcom{# Create a sequence of numbers}
\hlstd{X} \hlkwb{=} \hlnum{2}\hlopt{:}\hlnum{10}
\hlcom{# Display basic statistical measures}
\hlkwd{summary}\hlstd{(X)}
\end{alltt}
\begin{verbatim}
## Min. 1st Qu. Median Mean 3rd Qu. Max.
## 2 4 6 6 8 10
\end{verbatim}
\end{kframe}
\end{knitrout}
t
t
t
t
t
t
\begin{knitrout}
\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
\begin{alltt}
\hlstd{fileConn}\hlkwb{<-}\hlkwd{file}\hlstd{(}\hlstr{"data.txt"}\hlstd{)}
\hlkwd{writeLines}\hlstd{(}\hlkwd{paste}\hlstd{(}\hlkwd{c}\hlstd{(}\hlnum{1}\hlopt{:}\hlnum{10}\hlstd{),} \hlkwc{collapse}\hlstd{=}\hlstr{", "}\hlstd{), fileConn)}
\hlkwd{close}\hlstd{(fileConn)}
\end{alltt}
\end{kframe}
\end{knitrout}
and output
\begin{knitrout}
\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
\begin{alltt}
\hlstd{fileConn} \hlkwb{<-} \hlkwd{file}\hlstd{(}\hlstr{"data.txt"}\hlstd{)}
\hlstd{data} \hlkwb{<-} \hlkwd{readLines}\hlstd{(fileConn)}
\hlkwd{message}\hlstd{(data)}
\end{alltt}
{\ttfamily\noindent\itshape\color{messagecolor}{\#\# 1, 2, 3, 4, 5, 6, 7, 8, 9, 10}}\end{kframe}
\end{knitrout}
data: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10.
t
\begin{knitrout}
\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
\begin{alltt}
\hlkwd{system}\hlstd{(}\hlstr{"mount"}\hlstd{,} \hlkwc{intern} \hlstd{=} \hlnum{TRUE}\hlstd{)}
\end{alltt}
\begin{verbatim}
## [1] "none on / type aufs (rw,relatime,si=34223f5145629321,dio,dirperm1)"
## [2] "proc on /proc type proc (rw,nosuid,nodev,noexec,relatime)"
## [3] "tmpfs on /dev type tmpfs (rw,nosuid,mode=755)"
## [4] "devpts on /dev/pts type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=666)"
## [5] "sysfs on /sys type sysfs (ro,nosuid,nodev,noexec,relatime)"
## [6] "tmpfs on /sys/fs/cgroup type tmpfs (ro,nosuid,nodev,noexec,relatime,mode=755)"
## [7] "cgroup on /sys/fs/cgroup/systemd type cgroup (ro,nosuid,nodev,noexec,relatime,xattr,release_agent=/lib/systemd/systemd-cgroups-agent,name=systemd)"
## [8] "cgroup on /sys/fs/cgroup/blkio type cgroup (ro,nosuid,nodev,noexec,relatime,blkio)"
## [9] "cgroup on /sys/fs/cgroup/rdma type cgroup (ro,nosuid,nodev,noexec,relatime,rdma)"
## [10] "cgroup on /sys/fs/cgroup/hugetlb type cgroup (ro,nosuid,nodev,noexec,relatime,hugetlb)"
## [11] "cgroup on /sys/fs/cgroup/memory type cgroup (ro,nosuid,nodev,noexec,relatime,memory)"
## [12] "cgroup on /sys/fs/cgroup/cpuset type cgroup (ro,nosuid,nodev,noexec,relatime,cpuset)"
## [13] "cgroup on /sys/fs/cgroup/net_cls,net_prio type cgroup (ro,nosuid,nodev,noexec,relatime,net_cls,net_prio)"
## [14] "cgroup on /sys/fs/cgroup/perf_event type cgroup (ro,nosuid,nodev,noexec,relatime,perf_event)"
## [15] "cgroup on /sys/fs/cgroup/freezer type cgroup (ro,nosuid,nodev,noexec,relatime,freezer)"
## [16] "cgroup on /sys/fs/cgroup/cpu,cpuacct type cgroup (ro,nosuid,nodev,noexec,relatime,cpu,cpuacct)"
## [17] "cgroup on /sys/fs/cgroup/pids type cgroup (ro,nosuid,nodev,noexec,relatime,pids)"
## [18] "cgroup on /sys/fs/cgroup/devices type cgroup (ro,nosuid,nodev,noexec,relatime,devices)"
## [19] "mqueue on /dev/mqueue type mqueue (rw,nosuid,nodev,noexec,relatime)"
## [20] "10.99.185.156:/2018-06-11_1604_p4/linux/Ubuntu-16.04/lib32 on /lib32 type nfs4 (ro,relatime,vers=4.0,rsize=1048576,wsize=1048576,namlen=255,soft,proto=tcp,timeo=30,retrans=3,sec=sys,clientaddr=10.240.0.13,fsc,local_lock=none,addr=10.99.185.156)"
## [21] "10.99.185.156:/2018-06-11_1604_p4/linux/Ubuntu-16.04/lib64 on /lib64 type nfs4 (ro,relatime,vers=4.0,rsize=1048576,wsize=1048576,namlen=255,soft,proto=tcp,timeo=30,retrans=3,sec=sys,clientaddr=10.240.0.13,fsc,local_lock=none,addr=10.99.185.156)"
## [22] "tmpfs on /tmp type tmpfs (rw,relatime)"
## [23] "10.99.185.156:/2018-06-11_1604_p4/linux/Ubuntu-16.04/sbin on /sbin type nfs4 (ro,relatime,vers=4.0,rsize=1048576,wsize=1048576,namlen=255,soft,proto=tcp,timeo=30,retrans=3,sec=sys,clientaddr=10.240.0.13,fsc,local_lock=none,addr=10.99.185.156)"
## [24] "10.99.185.156:/2018-06-11_1604_p4/linux/Ubuntu-16.04/usr on /usr type nfs4 (ro,relatime,vers=4.0,rsize=1048576,wsize=1048576,namlen=255,soft,proto=tcp,timeo=30,retrans=3,sec=sys,clientaddr=10.240.0.13,fsc,local_lock=none,addr=10.99.185.156)"
## [25] "10.99.185.156:/2018-06-11_1604_p4 on /ext type nfs4 (ro,relatime,vers=4.0,rsize=1048576,wsize=1048576,namlen=255,soft,proto=tcp,timeo=30,retrans=3,sec=sys,clientaddr=10.240.0.13,fsc,local_lock=none,addr=10.99.185.156)"
## [26] "10.99.185.156:/2018-06-11_1604_p4/linux/Ubuntu-16.04/opt on /opt type nfs4 (ro,relatime,vers=4.0,rsize=1048576,wsize=1048576,namlen=255,soft,proto=tcp,timeo=30,retrans=3,sec=sys,clientaddr=10.240.0.13,fsc,local_lock=none,addr=10.99.185.156)"
## [27] "10.99.185.156:/2018-06-11_1604_p4/linux/Ubuntu-16.04/bin on /bin type nfs4 (ro,relatime,vers=4.0,rsize=1048576,wsize=1048576,namlen=255,soft,proto=tcp,timeo=30,retrans=3,sec=sys,clientaddr=10.240.0.13,fsc,local_lock=none,addr=10.99.185.156)"
## [28] "10.99.185.156:/2018-06-11_1604_p4/linux/Ubuntu-16.04/libx32 on /libx32 type nfs4 (ro,relatime,vers=4.0,rsize=1048576,wsize=1048576,namlen=255,soft,proto=tcp,timeo=30,retrans=3,sec=sys,clientaddr=10.240.0.13,fsc,local_lock=none,addr=10.99.185.156)"
## [29] "10.99.185.156:/2018-06-11_1604_p4/linux/Ubuntu-16.04/var on /var type nfs4 (ro,relatime,vers=4.0,rsize=1048576,wsize=1048576,namlen=255,soft,proto=tcp,timeo=30,retrans=3,sec=sys,clientaddr=10.240.0.13,fsc,local_lock=none,addr=10.99.185.156)"
## [30] "10.99.185.156:/2018-06-11_1604_p4/linux/Ubuntu-16.04/etc on /etc type nfs4 (ro,relatime,vers=4.0,rsize=1048576,wsize=1048576,namlen=255,soft,proto=tcp,timeo=30,retrans=3,sec=sys,clientaddr=10.240.0.13,fsc,local_lock=none,addr=10.99.185.156)"
## [31] "10.99.185.156:/2018-06-11_1604_p4/linux/Ubuntu-16.04/lib on /lib type nfs4 (ro,relatime,vers=4.0,rsize=1048576,wsize=1048576,namlen=255,soft,proto=tcp,timeo=30,retrans=3,sec=sys,clientaddr=10.240.0.13,fsc,local_lock=none,addr=10.99.185.156)"
## [32] "tmpfs on /secrets/secret-token type tmpfs (ro,relatime)"
## [33] "kucalc-default-project-20e4a191-73ea-4921-80e9-0a5d792fc511 on /home/user type zfs (rw,xattr,noacl)"
## [34] "bindfs on /home/user/.snapshots type fuse.bindfs (rw,nosuid,nodev,relatime,user_id=0,group_id=0,default_permissions,allow_other)"
## [35] "tmpfs on /secrets/gateway-public type tmpfs (ro,relatime)"
## [36] "/dev/sda1 on /dev/termination-log type ext4 (rw,relatime,data=ordered)"
## [37] "/dev/sda1 on /etc/resolv.conf type ext4 (rw,relatime,data=ordered)"
## [38] "/dev/sda1 on /etc/hostname type ext4 (rw,relatime,data=ordered)"
## [39] "/dev/sda1 on /etc/hosts type ext4 (rw,relatime,data=ordered)"
## [40] "shm on /dev/shm type tmpfs (rw,nosuid,nodev,noexec,relatime,size=65536k)"
## [41] "tmpfs on /run/secrets/kubernetes.io/serviceaccount type tmpfs (ro,relatime)"
## [42] "proc on /proc/bus type proc (ro,nosuid,nodev,noexec,relatime)"
## [43] "proc on /proc/fs type proc (ro,nosuid,nodev,noexec,relatime)"
## [44] "proc on /proc/irq type proc (ro,nosuid,nodev,noexec,relatime)"
## [45] "proc on /proc/sys type proc (ro,nosuid,nodev,noexec,relatime)"
## [46] "proc on /proc/sysrq-trigger type proc (ro,nosuid,nodev,noexec,relatime)"
## [47] "tmpfs on /proc/kcore type tmpfs (rw,nosuid,mode=755)"
## [48] "tmpfs on /proc/timer_list type tmpfs (rw,nosuid,mode=755)"
## [49] "tmpfs on /proc/sched_debug type tmpfs (rw,nosuid,mode=755)"
\end{verbatim}
\end{kframe}
\end{knitrout}
\begin{knitrout}
\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
\begin{alltt}
\hlkwd{system}\hlstd{(}\hlstr{"hostname"}\hlstd{,} \hlkwc{intern} \hlstd{=} \hlnum{TRUE}\hlstd{)}
\end{alltt}
\begin{verbatim}
## [1] "project-20e4a191-73ea-4921-80e9-0a5d792fc511"
\end{verbatim}
\end{kframe}
\end{knitrout}
\begin{knitrout}
\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
\begin{alltt}
\hlkwd{system}\hlstd{(}\hlstr{"cat /etc/os-release"}\hlstd{,} \hlkwc{intern} \hlstd{=} \hlnum{TRUE}\hlstd{)}
\end{alltt}
\begin{verbatim}
## [1] "NAME=\"Ubuntu\""
## [2] "VERSION=\"16.04.4 LTS (Xenial Xerus)\""
## [3] "ID=ubuntu"
## [4] "ID_LIKE=debian"
## [5] "PRETTY_NAME=\"Ubuntu 16.04.4 LTS\""
## [6] "VERSION_ID=\"16.04\""
## [7] "HOME_URL=\"http://www.ubuntu.com/\""
## [8] "SUPPORT_URL=\"http://help.ubuntu.com/\""
## [9] "BUG_REPORT_URL=\"http://bugs.launchpad.net/ubuntu/\""
## [10] "VERSION_CODENAME=xenial"
## [11] "UBUNTU_CODENAME=xenial"
\end{verbatim}
\end{kframe}
\end{knitrout}
\begin{knitrout}
\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
\begin{alltt}
\hlkwd{system}\hlstd{(}\hlstr{"ls -la"}\hlstd{,} \hlkwc{intern} \hlstd{=} \hlnum{TRUE}\hlstd{)}
\end{alltt}
\begin{verbatim}
## [1] "total 1808"
## [2] "drwxrwx--- 9 user user 150 Jul 8 09:06 ."
## [3] "drwx------ 135 user user 1120 Jul 9 12:19 .."
## [4] "-rw-r----- 1 user user 1611 Jan 3 2016 ..test.ipynb.syncdoc4.sage-history"
## [5] "-rw-r--r-- 1 user user 0 Jun 18 14:09 .2018-01-28-210904.tex.lock"
## [6] "-rw-rw---- 1 user user 0 Apr 11 2015 .data.sagetex.sout.sage-chat"
## [7] "-rw-rw---- 1 user user 3843 Apr 11 2015 .data.sagetex.sout.sage-history"
## [8] "-rw-rw---- 1 user user 0 Apr 11 2015 .data.sagews.sage-chat"
## [9] "-rw-rw---- 1 user user 104801 Apr 11 2015 .data.sagews.sage-history"
## [10] "-rw-r--r-- 1 user user 0 Feb 1 19:15 .data.tex.lock"
## [11] "-rw-rw---- 1 user user 579 Apr 13 2015 .data.tex.sage-chat"
## [12] "-rw-rw---- 1 user user 64183 Jun 11 2015 .data.tex.sage-history"
## [13] "-rw-r--r-- 1 user user 145 Jun 22 07:58 .default.tex.syncdb"
## [14] "-rw------- 1 user user 0 Sep 19 2017 .empty.tex.lock"
## [15] "-rw------- 1 user user 0 May 24 10:35 .example.tex.lock"
## [16] "-rw-rw---- 1 user user 850 Mar 29 12:56 .example.tex.sage-chat"
## [17] "-rw-rw---- 1 user user 8029 Apr 13 2015 .example.tex.sage-history"
## [18] "-rw-r--r-- 1 user user 149 Jun 18 13:56 .example.tex.syncdb"
## [19] "-rw-r--r-- 1 user user 148 Jun 22 07:57 .german.tex.syncdb"
## [20] "-rw-rw---- 1 user user 0 Dec 18 2013 .hangul.tex.sage-chat"
## [21] "drwxr-x--- 2 user user 3 Jan 3 2016 .ipynb_checkpoints"
## [22] "-rw-r----- 1 user user 0 Mar 11 2016 .latexmk.fls.sage-chat"
## [23] "-rw-r----- 1 user user 4128 Mar 11 2016 .latexmk.fls.sage-history"
## [24] "-rw-r--r-- 1 user user 0 Mar 14 14:36 .latexmk.tex.lock"
## [25] "-rw-r----- 1 user user 0 Dec 2 2015 .latexmk.tex.sage-chat"
## [26] "-rw-r----- 1 user user 3325 Dec 30 2015 .latexmk.tex.sage-history"
## [27] "-rw------- 1 user user 0 Feb 1 19:33 .long-presentation.tex.lock"
## [28] "-rw-r--r-- 1 user user 0 Mar 28 16:55 .small.tex.lock"
## [29] "-rw-r--r-- 1 user user 0 Aug 16 2015 .subdir.tex.sage-chat"
## [30] "-rw-r--r-- 1 user user 1149 Aug 16 2015 .subdir.tex.sage-history"
## [31] "-rw-r--r-- 1 user user 144 Jul 4 14:14 .system.rnw.syncdb"
## [32] "-rw-r----- 1 user user 636 Jan 3 2016 .test.ipynb.syncdoc4"
## [33] "-rw-r--r-- 1 user user 142 Jun 30 07:50 .test.rnw.syncdb"
## [34] "-rw-r--r-- 1 user user 0 Jun 29 14:29 .test.tex.lock"
## [35] "-rw-r--r-- 1 user user 109 Jun 18 14:09 2018-01-28-210904-concordance.tex"
## [36] "-rw-r--r-- 1 user user 8 Jun 18 14:09 2018-01-28-210904.aux"
## [37] "-rw-r--r-- 1 user user 7687 Jun 18 14:09 2018-01-28-210904.fdb_latexmk"
## [38] "-rw-r--r-- 1 user user 7029 Jun 18 14:09 2018-01-28-210904.fls"
## [39] "-rw-r--r-- 1 user user 32206 Jun 18 14:09 2018-01-28-210904.log"
## [40] "-rw-r--r-- 1 user user 67985 Jun 18 14:09 2018-01-28-210904.pdf"
## [41] "-rw-r--r-- 1 user user 571 Jan 28 20:09 2018-01-28-210904.rnw"
## [42] "-rw-r--r-- 1 user user 2154 Jun 18 14:09 2018-01-28-210904.synctex.gz"
## [43] "-rw-r--r-- 1 user user 2878 Jun 18 14:09 2018-01-28-210904.tex"
## [44] "-rw-rw---- 1 user user 200 Apr 11 2015 E2.sobj"
## [45] "drwxr-xr-x 2 user user 8 Jun 19 2017 build"
## [46] "drwxr-xr-x 2 user user 30 Jul 4 14:16 cache"
## [47] "-rw-r----- 1 user user 181 Feb 1 19:15 data.aux"
## [48] "-rw-r----- 1 user user 6549 Feb 1 19:15 data.fdb_latexmk"
## [49] "-rw-r--r-- 1 user user 6439 Feb 1 19:15 data.fls"
## [50] "-rw-r----- 1 user user 12449 Feb 1 19:15 data.log"
## [51] "-rw-r----- 1 user user 58943 Feb 1 19:15 data.pdf"
## [52] "-rw-r----- 1 user user 1374 Feb 1 19:15 data.sagetex.sage"
## [53] "-rw-r--r-- 1 user user 2187 Feb 1 19:15 data.sagetex.sage.py"
## [54] "-rw-r--r-- 1 user user 238 Feb 1 19:15 data.sagetex.scmd"
## [55] "-rw-r--r-- 1 user user 1495 Feb 1 19:15 data.sagetex.sout"
## [56] "-rw-rw---- 1 user user 5790 Apr 11 2015 data.sagews"
## [57] "-rw-r--r-- 1 user user 8855 Feb 1 19:15 data.synctex.gz"
## [58] "-rw-rw---- 1 user user 1402 Jan 1 2017 data.tex"
## [59] "-rw-r--r-- 1 user user 30 Jul 4 14:16 data.txt"
## [60] "-rw-r--r-- 1 user user 662 Jul 1 09:00 default.aux"
## [61] "-rw-r--r-- 1 user user 6261 Jul 1 09:00 default.fdb_latexmk"
## [62] "-rw-r--r-- 1 user user 5449 Jul 1 09:00 default.fls"
## [63] "-rw-r--r-- 1 user user 27372 Jul 1 09:00 default.log"
## [64] "-rw-r--r-- 1 user user 0 Jul 1 09:00 default.out"
## [65] "-rw-r--r-- 1 user user 63141 Jul 1 09:00 default.pdf"
## [66] "-rw-r--r-- 1 user user 1094 Jul 1 09:00 default.synctex.gz"
## [67] "-rw-r--r-- 1 user user 661 Jun 22 07:58 default.tex"
## [68] "-rw------- 1 user user 8 Sep 19 2017 empty.aux"
## [69] "-rw------- 1 user user 4481 Sep 19 2017 empty.fdb_latexmk"
## [70] "-rw------- 1 user user 3243 Sep 19 2017 empty.fls"
## [71] "-rw------- 1 user user 20577 Sep 19 2017 empty.log"
## [72] "-rw------- 1 user user 63238 Sep 19 2017 empty.pdf"
## [73] "-rw------- 1 user user 875 Sep 19 2017 empty.synctex.gz"
## [74] "-rw------- 1 user user 0 Sep 19 2017 empty.tex"
## [75] "-rw-r--r-- 1 user user 528 Jun 27 21:24 example.aux"
## [76] "-rw-r--r-- 1 user user 7228 Jun 27 21:24 example.fdb_latexmk"
## [77] "-rw-r--r-- 1 user user 7012 Jun 27 21:24 example.fls"
## [78] "-rw-r--r-- 1 user user 9566 Jun 27 21:24 example.log"
## [79] "-rw-r----- 1 user user 134933 Jun 27 21:24 example.pdf"
## [80] "-rw-r--r-- 1 user user 5403 Jun 27 21:24 example.sagetex.sage"
## [81] "-rw-r--r-- 1 user user 9890 Jun 27 21:23 example.sagetex.sage.py"
## [82] "-rw-r--r-- 1 user user 241 Jun 27 21:24 example.sagetex.scmd"
## [83] "-rw-r--r-- 1 user user 1499 Jun 27 21:24 example.sagetex.sout"
## [84] "-rw-r--r-- 1 user user 22289 Jun 27 21:24 example.synctex.gz"
## [85] "-rw-rw---- 1 user user 7673 Jun 18 13:52 example.tex"
## [86] "drwxr-xr-x 2 user user 6 Jun 28 15:06 figure"
## [87] "-rw-r--r-- 1 user user 662 Jun 22 07:55 german.aux"
## [88] "-rw-r--r-- 1 user user 4398 Jun 22 07:55 german.fdb_latexmk"
## [89] "-rw-r--r-- 1 user user 4299 Jun 22 07:55 german.fls"
## [90] "-rw-r--r-- 1 user user 26221 Jun 22 07:55 german.log"
## [91] "-rw-r--r-- 1 user user 0 Jun 22 07:55 german.out"
## [92] "-rw-r--r-- 1 user user 26665 Jun 22 07:55 german.pdf"
## [93] "-rw-r--r-- 1 user user 885 Jun 22 07:55 german.synctex.gz"
## [94] "-rw-r--r-- 1 user user 707 Jun 22 07:56 german.tex"
## [95] "-rw-rw---- 1 user user 735 Dec 18 2013 hangul.tex"
## [96] "-rw-r----- 1 user user 1230 Mar 14 14:36 latexmk.aux"
## [97] "-rw-r----- 1 user user 5250 Mar 14 14:36 latexmk.fdb_latexmk"
## [98] "-rw-r--r-- 1 user user 4025 Mar 14 14:36 latexmk.fls"
## [99] "-rw-r----- 1 user user 8068 Mar 14 14:36 latexmk.log"
## [100] "-rw-r----- 1 user user 138479 Mar 14 14:36 latexmk.pdf"
## [101] "-rw-r--r-- 1 user user 111978 Mar 14 14:36 latexmk.synctex.gz"
## [102] "-rw-r----- 1 user user 2588 Mar 14 14:36 latexmk.tex"
## [103] "-rw-r--r-- 1 user user 7339 Feb 1 19:33 long-presentation.aux"
## [104] "-rw-r--r-- 1 user user 24994 Feb 1 19:33 long-presentation.fdb_latexmk"
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## [109] "-rw------- 1 user user 166408 Feb 1 19:33 long-presentation.pdf"
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## [114] "drwxr-xr-x 3 user user 18 Mar 21 10:17 multiple-files"
## [115] "drwxrwx--- 2 user user 18 Apr 11 2015 sage-plots-for-data.tex"
## [116] "drwxr-xr-x 2 user user 18 Jun 27 21:24 sage-plots-for-example.tex"
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\end{verbatim}
\end{kframe}
\end{knitrout}
\begin{knitrout}
\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
\begin{alltt}
\hlkwd{system}\hlstd{(}\hlstr{"ls -la .cache/clsi/*"}\hlstd{,} \hlkwc{intern} \hlstd{=} \hlnum{TRUE}\hlstd{)}
\end{alltt}
{\ttfamily\noindent\color{warningcolor}{\#\# Warning: running command 'ls -la .cache/clsi/*' had status 2}}\begin{verbatim}
## character(0)
## attr(,"status")
## [1] 2
\end{verbatim}
\end{kframe}
\end{knitrout}
\begin{knitrout}
\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
\begin{alltt}
\hlkwd{system}\hlstd{(}\hlstr{"cat .project-sync-state"}\hlstd{,} \hlkwc{intern} \hlstd{=} \hlnum{TRUE}\hlstd{)}
\end{alltt}
{\ttfamily\noindent\color{warningcolor}{\#\# Warning: running command 'cat .project-sync-state' had status 1}}\begin{verbatim}
## character(0)
## attr(,"status")
## [1] 1
\end{verbatim}
\end{kframe}
\end{knitrout}
\begin{knitrout}
\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
\begin{alltt}
\hlkwd{system}\hlstd{(}\hlstr{"ps aux"}\hlstd{,} \hlkwc{intern} \hlstd{=} \hlnum{TRUE}\hlstd{)}
\end{alltt}
\begin{verbatim}
## [1] "USER PID
## [2] "user 1 0.0 0.0 212 4 ? Ss 12:18 0:00 /cocalc/bin/dumb-init -- sh -c env -i /cocalc/init/init.sh $COCALC_PROJECT_ID"
## [3] "user 6 0.0 0.0 435708 7176 ? Ssl 12:18 0:00 /cocalc/bin/supervisord -c /cocalc/supervisor/supervisord.conf"
## [4] "user 24 0.0 0.0 67584 5656 ? S 12:18 0:00 /usr/sbin/sshd -D -p 2222 -h /tmp/.cocalc/ssh_host_rsa_key -o PidFile=/tmp/.cocalc/sshd.pid -f /cocalc/init/sshd_config"
## [5] "user 25 0.2 0.1 916568 36872 ? Sl 12:18 0:00 node /cocalc/src/smc-project/console_server.js --port=6002 --kucalc"
## [6] "user 28 9.1 0.6 1409232 176244 ? Sl 12:18 0:09 node /cocalc/src/smc-project/local_hub.js --tcp_port 6000 --raw_port 6001 --console_port=6002 --kucalc"
## [7] "user 67 0.1 0.1 900932 31600 ? Sl 12:18 0:00 /usr/bin/node /cocalc/src/smc-project/console_server_child.js"
## [8] "user 73 0.0 0.0 24516 7604 pts/0 Ss 12:18 0:00 bash"
## [9] "user 116 0.0 0.0 18984 2280 pts/0 S+ 12:18 0:00 tmux"
## [10] "user 118 0.0 0.0 28456 2768 ? Ss 12:18 0:00 tmux"
## [11] "user 119 0.1 0.0 24524 7600 pts/1 Ss+ 12:18 0:00 -bash"
## [12] "user 198 15.2 1.0 8606996 288952 ? Ssl 12:18 0:10 python -m sage.repl.ipython_kernel --matplotlib=inline -f /home/user/.local/share/jupyter/runtime/kernel-c5ae2e55-dbb7-4874-9c9c-480b8debe7e2.json"
## [13] "user 342 0.8 0.6 8042216 185112 ? S 12:19 0:00 python -c import sys; sys.path.extend(['/cocalc/lib/python2.7/site-packages/']); from smc_sagews.sage_server_command_line import main; main('restart')"
## [14] "user 343 18.8 1.0 8216760 284932 ? Sl 12:19 0:05 python -c import sys; sys.path.extend(['/cocalc/lib/python2.7/site-packages/']); from smc_sagews.sage_server_command_line import main; main('restart')"
## [15] "user 367 55.4 0.2 329164 60752 ? S 12:19 0:02 /usr/lib/R/bin/exec/R --no-save --no-restore --quiet --no-readline -e require(knitr);~+~opts_knit$set(concordance~+~=~+~TRUE,~+~progress~+~=~+~FALSE);~+~knit(\"system.rnw\")"
## [16] "user 399 0.0 0.0 38220 3132 ? R 12:19 0:00 ps aux"
\end{verbatim}
\end{kframe}
\end{knitrout}
ok
t
t
t
t
t
t
t
t
ok
\begin{knitrout}
\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
\begin{alltt}
\hlstd{n} \hlkwb{<-} \hlstd{n} \hlopt{+} \hlnum{0}
\hlkwd{Sys.sleep}\hlstd{(}\hlnum{0}\hlstd{)}
\hlkwd{message}\hlstd{(}\hlkwd{cat}\hlstd{(n,} \hlstr{"secs later"}\hlstd{))}
\end{alltt}
\begin{verbatim}
## 0 secs later
\end{verbatim}
{\ttfamily\noindent\itshape\color{messagecolor}{\#\# }}\end{kframe}
\end{knitrout}
t
t
ok
t
t
t
t
t
t
ok
t
t
t
t
t
t
ok
t
t
t
t
t
t
ok
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t
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ok
t
t
t
t
t
\begin{knitrout}
\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
\begin{alltt}
\hlkwd{message}\hlstd{(}\hlnum{1}\hlopt{:}\hlnum{10}\hlstd{)}
\end{alltt}
{\ttfamily\noindent\itshape\color{messagecolor}{\#\# 12345678910}}\end{kframe}
\end{knitrout}
ok
t
t
t
t
t
\begin{knitrout}
\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
\begin{alltt}
\hlkwd{message}\hlstd{(}\hlnum{1}\hlopt{:}\hlnum{10}\hlstd{)}
\end{alltt}
{\ttfamily\noindent\itshape\color{messagecolor}{\#\# 12345678910}}\end{kframe}
\end{knitrout}
ok
t
t
t
t
t
\begin{knitrout}
\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
\begin{alltt}
\hlkwd{message}\hlstd{(}\hlnum{1}\hlopt{:}\hlnum{10}\hlstd{)}
\end{alltt}
{\ttfamily\noindent\itshape\color{messagecolor}{\#\# 12345678910}}\end{kframe}
\end{knitrout}
ok
t
t
t
t
t
\begin{knitrout}
\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
\begin{alltt}
\hlkwd{message}\hlstd{(}\hlnum{1}\hlopt{:}\hlnum{10}\hlstd{)}
\end{alltt}
{\ttfamily\noindent\itshape\color{messagecolor}{\#\# 12345678910}}\end{kframe}
\end{knitrout}
\end{document}